Evolutionary Capacitance and Control of Protein Stability in Protein-Protein Interaction Networks Purushottam D. Dixit1, Sergei Maslov1,2,3* 1 Biology, Brookhaven National Laboratory, Upton, New York, United States of Am

Source URL: www.cmth.bnl.gov

• Biology
• Protein structure
• Structural biology
• Biochemistry
• Proteins
• Proteomics
• Molecular biology
• Structural proteins
• Protein folding
• Intrinsically disordered proteins
• Unfolded protein response
• Multiprotein complex

MITSUBISHI ELECTRIC RESEARCH LABORATORIES http://www.merl.com A Complete and Effective Move Set for Simplified Protein Folding

Source URL: www.eecs.harvard.edu

• Graph theory
• Mathematics
• Graph connectivity
• Algorithm
• Mathematical logic
• Theoretical computer science
• Path
• Local search
• Ear decomposition
• Eulerian path

Thermodynamics of Protein Folding and Design Erik Sandelin Department of Theoretical Physics Lund University, Sweden

Source URL: www.sbc.su.se

PROTEINS: Structure, Function, and Genetics 50:537–Folding in Lipid Membranes (FILM): A Novel Method for the Prediction of Small Membrane Protein 3D Structures M. Pellegrini-Calace,1,2 A. Carotti,1 and D. T

Source URL: bioinfadmin.cs.ucl.ac.uk

Analytical and Numerical Investigation of 3D Multilayer Detachment Folding Naiara Fernández and Boris Kaus 1 Introduction Folding is a common mode of deformation in geology when mechanically layered

Source URL: www.geowiss.uni-mainz.de

• Structural geology
• Detachment fold
• Fold
• Viscosity
• Protein domain

Protein Folding and the IBM BlueGene Supercomputer Shawn Douglas December 13, 2002 Abstract Understanding how proteins fold is an important step in uncovering the mysteries of protein function. To date, the computational

Source URL: bioinfo.csb.yale.edu

104 Genome Informatics 16(2): 104–A Study of Fragment-Based Protein Structure Prediction: Biased Fragment Replacement for Searching

Source URL: www.jsbi.org

• Bioinformatics
• Protein structure
• Biology
• Protein methods
• Structural biology
• Chemistry
• Homology modeling
• Protein structure prediction
• CASP
• Protein secondary structure
• Threading
• Protein folding

Evolutionary Innovations and the Organization of Protein Functions in Genotype Space Evandro Ferrada1,3*, Andreas Wagner1,2,3,4 1 Department of Biochemistry, University of Zurich, Zurich, Switzerland, 2 The Santa Fe Inst

Source URL: www.ieu.uzh.ch

• Protein structure
• Proteins
• Bioinformatics
• Genetics
• Computational phylogenetics
• Sequence space
• Protein superfamily
• Sequence alignment
• Protein domain
• Protein family
• Protein folding
• Protein

Prions, Zebrafish and Alzheimer’s Disease W. Ted Allison University of Alberta Departments of Biological Sciences & Medical Genetics Centre for Prions & Protein Folding Diseases

Source URL: bio.albertainnovates.ca

PROTEINS: Structure, Function, and Genetics 33:204–Accuracy of Side-Chain Prediction Upon Near-Native Protein Backbones Generated by Ab Initio Folding Methods Enoch S. Huang,1 Patrice Koehl,2 Michael Levitt

Source URL: people.bu.edu